PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 492aa    MW: 53634.2 Da    PI: 9.3266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k F r  nL+ H r H
  XP_009129170.1  82 FICDVCKKGFQREQNLQLHRRGH 104
                     89*******************88 PP

2zf-C2H213.40.00023158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_009129170.1 158 WKCEKCSKRYAVQSDWKAHSKTC 180
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-681104No hitNo description
Gene3DG3DSA:3.30.160.606.0E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.61682104IPR007087Zinc finger, C2H2
SMARTSM003550.01482104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355170123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-6153178No hitNo description
SMARTSM00355130158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSSSSYNASV APSSSSAEPF FLTGSGVGDN EFDRKDTFIS MIQEPNSSAQ PPKKRRNQPG  60
NPNPDAEVVA LSPKTLMATN RFICDVCKKG FQREQNLQLH RRGHNLPWKL KQKSTKDVKR  120
KVYLCPEPTC VHHDHSRALG DLTGIKKHYY RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QETARNSTVS FTSMASASSG AVSGGFYRRL  240
DGGNALAHRN LNDHHNSGFS TIPGYNLNIA SSENSRDYVQ QTSDPNFLNQ ISSSQRVLTV  300
PNNNDQSFMN EHGMIQFDPV NNTNLKSNTN NSFFNLGFFH ENTKNSETSL PSLYSTDVHT  360
RSSNVSATAL LQKATQMGSV TSNDPSAFFR GLASSSNSSS VVGNDFGGGQ IMGNNNNGSL  420
QGLVSSLVAV NGGGAGGSGG NIFDVHFGNI ENMSGSDKLT LDFLGVGGLV RNVNRGGGHG  480
DVPEQNHTFG RP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129169.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_009129170.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_009129171.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_009129173.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_009129174.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM4ECV60.0M4ECV6_BRARP; Uncharacterized protein
STRINGBra026616.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4